gov.lanl.Web
Class SyndromeReport

java.lang.Object
  |
  +--gov.lanl.Web.SyndromeReport

public class SyndromeReport

extends java.lang.Object

Version:

$Revision: 1.27 $ $Date: 2003/02/07 18:14:22 $

Author:

$Author: dwokoun $

Nested Class Summary

static class	SyndromeReport.CalendarComparator
static class	SyndromeReport.PageStats Holder class for the results of a Page's statistic computation.

Constructor Summary

SyndromeReport()
Creates new SyndromeReport with default chart (JFreeChart)

SyndromeReport(JFreeChartGenericChart chart)
Creates new SyndromeReport with user specified chart

Method Summary

void	addField(java.lang.String field) add field for display
static void	expandCountsMap(java.util.TreeMap calendars) Fill in the missing slots in a Calendar-to-Integer mapping with zeros.
java.lang.String	getAllRecords() return XMl string of all contained records
java.lang.String	getChart(java.lang.String[] facilities, java.lang.String syndromeName, java.lang.String start, java.lang.String stop, boolean fullData) Compute the time history chart
org.w3c.dom.Document	getDom(int no) return Dom representation of specified record
java.util.Vector	getFields() return the fields labels
DateGraphGenerator[]	getGenerators() Get the generators used to produce the graph data.
int	getInterval() Get the chart interval as a date code from java.util.Calendar.
int	getNumber() return the number of observations that were found
org.w3c.dom.Document	getObsById(int no) get the ObservationId associated with a data element
java.util.ArrayList	getObservations(java.lang.String[] facilities, java.lang.String syndromeName, java.lang.String start, java.lang.String stop, boolean fullData) Get observations from the server, merging results from multiple facilities.
org.omg.DsObservationAccess.ObservationDataStruct[]	getObservations(java.lang.String facility, java.lang.String syndromeName, java.lang.String start, java.lang.String stop, boolean fullData) get the observations from the server
java.util.TreeSet	getPageStatisticsByDay(java.lang.String syndrome, java.util.Calendar t0Date, java.util.Calendar endDate) Get an ordered set of page statistics for the current observations (which are obtained from CountsDaemon)
java.lang.String	getRangedChart(java.lang.String[] facilities, java.lang.String syndromeName, java.lang.String start, java.lang.String stop, boolean fullData) Get a chart with control chart information superimposed.
java.lang.String	getRecord(int no) return XML string of the specified record
java.util.Vector	getRecords() return a Collection of Events organized by row with date/syndrome/facility/clinician in the row
java.util.TreeMap	getSortedCountsByDay() Get an ordered mapping of calendars to Integers containing the number of counts found on that date in the given observation data
static java.util.TreeMap	getSortedCountsByDay(org.omg.DsObservationAccess.ObservationDataStruct[] observations) Get an ordered mapping of calendars to Integers containing the number of counts found on that date in the given observation data
java.lang.String	getStackedChart(java.lang.String[] facilities, java.lang.String[] syndromeNames, java.lang.String start, java.lang.String stop, boolean fullData) Compute the time history chart
static java.util.ArrayList	removeDuplicates(java.util.ArrayList observations) Remove duplicate observations (as determined by the OBSERVATION_ID) from the data set, keeping only the most recent (as determined by DATE_RECORDED)
void	setCoas(COAS coas) set the COAS server
void	setFields(java.lang.String[] inFields) replace the fields with these (but retain Date_Time as first field no matter what)
void	setInterval(java.lang.String interval) set the Interval
void	setPlotType(java.lang.String plotType) set the plot type
void	setProperties(java.util.Properties props) set the Properties
void	setWriteDirectory(java.lang.String writeDirectory) set the write Directory

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SyndromeReport

public SyndromeReport()

Creates new SyndromeReport with default chart (JFreeChart)

SyndromeReport

public SyndromeReport(JFreeChartGenericChart chart)

Creates new SyndromeReport with user specified chart

Method Detail

setProperties

public void setProperties(java.util.Properties props)

set the Properties

Parameters:

props - Properties

setCoas

public void setCoas(COAS coas)

set the COAS server

Parameters:

coas - COAS server

setInterval

public void setInterval(java.lang.String interval)

set the Interval

Parameters:

interval - determines DAY, WEEK, or MONTH for time bins

getInterval

public int getInterval()

Get the chart interval as a date code from java.util.Calendar.

setWriteDirectory

public void setWriteDirectory(java.lang.String writeDirectory)

set the write Directory

Parameters:

writeDirectory - Where to write the plot

setPlotType

public void setPlotType(java.lang.String plotType)

set the plot type

Parameters:

plotType - String with the plot type

addField

public void addField(java.lang.String field)

add field for display

getFields

public java.util.Vector getFields()

return the fields labels

getNumber

public int getNumber()

return the number of observations that were found

setFields

public void setFields(java.lang.String[] inFields)

replace the fields with these (but retain Date_Time as first field no matter what)

Parameters:

inFields -

getObservations

public org.omg.DsObservationAccess.ObservationDataStruct[] getObservations(java.lang.String facility,
                                                                           java.lang.String syndromeName,
                                                                           java.lang.String start,
                                                                           java.lang.String stop,
                                                                           boolean fullData)

get the observations from the server

getObservations

public java.util.ArrayList getObservations(java.lang.String[] facilities,
                                           java.lang.String syndromeName,
                                           java.lang.String start,
                                           java.lang.String stop,
                                           boolean fullData)

Get observations from the server, merging results from multiple facilities.

Parameters:

facilities - List of facilities to get data for, or null to get all facilities.

syndromeName - Syndrome name to get observations for.

start - Start of interval.

stop - End of interval.

fullData - Whether to return full observation data (otherwise return qualifiers only).

Returns:

List of ObservationDataStruct.

getChart

public java.lang.String getChart(java.lang.String[] facilities,
                                 java.lang.String syndromeName,
                                 java.lang.String start,
                                 java.lang.String stop,
                                 boolean fullData)

Compute the time history chart

Parameters:

syndromeName - Syndrome to be looked up

start - begining of interval

stop - end of interval

Returns:

plot file name

getRangedChart

public java.lang.String getRangedChart(java.lang.String[] facilities,
                                       java.lang.String syndromeName,
                                       java.lang.String start,
                                       java.lang.String stop,
                                       boolean fullData)

Get a chart with control chart information superimposed.

Parameters:

facilities - Facilities to get data for.

syndromeName - Syndrome name to plot

start - Beginning of interval

stop - End of interval

fullData - Whether to query full observation data (not just qualifiers)

Returns:

Plot file name

getStackedChart

public java.lang.String getStackedChart(java.lang.String[] facilities,
                                        java.lang.String[] syndromeNames,
                                        java.lang.String start,
                                        java.lang.String stop,
                                        boolean fullData)

Compute the time history chart

Parameters:

facilities - Facilities to get data for.

syndromeNames - Syndromes to be looked up

start - begining of interval

stop - end of interval

fullData - Whether to query full observation data (not just qualifiers)

Returns:

plot file name

removeDuplicates

public static java.util.ArrayList removeDuplicates(java.util.ArrayList observations)

Remove duplicate observations (as determined by the OBSERVATION_ID) from the data set, keeping only the most recent (as determined by DATE_RECORDED)

getRecords

public java.util.Vector getRecords()

return a Collection of Events organized by row with date/syndrome/facility/clinician in the row

getRecord

public java.lang.String getRecord(int no)

return XML string of the specified record

Parameters:

no - record number to be retrieved

getDom

public org.w3c.dom.Document getDom(int no)

return Dom representation of specified record

Parameters:

no - of record to be returned

getObsById

public org.w3c.dom.Document getObsById(int no)

get the ObservationId associated with a data element

Parameters:

no -

Returns:

getGenerators

public DateGraphGenerator[] getGenerators()

Get the generators used to produce the graph data. Only valid after some form of getChart() has been called.

getSortedCountsByDay

public java.util.TreeMap getSortedCountsByDay()

Get an ordered mapping of calendars to Integers containing the number of counts found on that date in the given observation data

getSortedCountsByDay

public static java.util.TreeMap getSortedCountsByDay(org.omg.DsObservationAccess.ObservationDataStruct[] observations)

Get an ordered mapping of calendars to Integers containing the number of counts found on that date in the given observation data

expandCountsMap

public static void expandCountsMap(java.util.TreeMap calendars)

Fill in the missing slots in a Calendar-to-Integer mapping with zeros.

getPageStatisticsByDay

public java.util.TreeSet getPageStatisticsByDay(java.lang.String syndrome,
                                                java.util.Calendar t0Date,
                                                java.util.Calendar endDate)

Get an ordered set of page statistics for the current observations (which are obtained from CountsDaemon)

Parameters:

syndrome - Syndrome name to get Page's statistics for

t0Date - Date to start Page calculations at

endDate - Date to stop Page calculations at

getAllRecords

public java.lang.String getAllRecords()

return XMl string of all contained records